Research projects
Cluster de Cómputo de Alto Rendimiento "Mazorka"
Infraestructura
Queue |
Nodos (prendidos) |
Proc / Nodo |
Núcleos / Proc |
Núcleos / Nodo |
RAM [GB/Nodo] |
Procesador |
ensam | 5 (5) | 2 | 10 | 20 | 768 | E5-2650 @ 2.30GHz |
ensam | 2 (2) | 4 | 8 | 32 | 256 | E7-4820 @ 2.00 GHZ |
default | 16 (16) | 2 | 10 | 20 | 64 |
E5-2650 V3 @ 2.30GHz |
default | 3 (3) | 2 | 4 | 8 | 64 | E5530 @ 2.40GHz |
default | 5 (5) | 2 | 4 | 8 | 48 | E5530 @ 2.40GHz |
default | 18 (14) | 2 | 4 | 8 | 24 | E5530 @ 2.40GHz |
TOTAL | 49 (45) |
|
| 660 | 6144 |
|
Espacio en servidor de discos Lustre | 163 TB |
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Link a la página del Cluster Híbrido de Supercómputo - Xiuhcoatl - Cinvestav
Aplicaciones
|
ABCtoolbox/2.0 |
geneid/1.4 |
phylip/3.696 |
treemix/1.12 |
|
hapQTL/0.99 |
picard/2.4.1 | trimAl/1.2rev59 | |
|
augustus/2.5.5 |
hisat2/2.0.4 |
plink/1.9 | trinity/2.1.1 |
bcftools/1.2 | hmmer/3.1b1 | prank/150803 | Trinotate/2.0.2 |
bedtools2/2.25.0 | Honey/14.1.15 | pyrad/3.0.6 | tRNAscan/1.3.1 |
bowtie/1.1.0 | HTSeq/0.6.1 | qiime/1.9.1 | usearch/5.2.236 |
bowtie2/2.2.3 | infernal/1.1.1 | R/3.2.5 | usearch/6.1.544 |
bwa/0.7.12 | Kalign/2.04 | RECON/1.07 | usearch/7.0.1090 |
cd-hit/4.6 | lastz/1.02 | RepeatMasker/4.0 | usearch/8.1.1861 |
cegma/2.5 | maker/2.31 | rnammer/1.2 | vcftools/0.1.13 |
circos/0.69-2 | mapreads/2.4.1 | samtools/1.3.1 | velvet/1.2.10 |
discovar/52488 | mb/3.2.3 | SnpEff/4.0e | Vienna/2.2.5 |
EMBOSS/6.6.0 | mcl/12-068 | SPAdes/3.8.1 |
vsearch/1.11.1 |
exonerate/2.2.0 | mpirun/3.2 | STAR/2.5.2a | wgs/8.2 |
FastQC/0.11.2 | muscle/3.8.31 | strauto/1.0 | wise/2.4.1 |
FrameD/230207 | ncbi-blast/2.2.31 | structure/2.3.4 |
|
GATK/3.5.0 | orthologid/1.0.8 | tabix/0.2.6 | |
Gblocks/0.91b | orthomcl/2.0.9 | TransDecoder/3.0.0 |
For more information, contact: Cei Abreu-Goodger
