cinvestav

Research projects

Cluster de Cómputo de Alto Rendimiento "Mazorka"



 

Infraestructura

 

Queue

Nodos (prendidos)

Proc / Nodo

Núcleos / Proc

Núcleos / Nodo

RAM [GB/Nodo]

Procesador

TFLOPS / Queue

ensam

2 (2)

32

260

E7-4820  @ 2.00GHz

0.512 

default

16 (16)

10 

20

64

E5-2650 V3 2.30 GHZ

1.179 

default

5 (5)

10 

20

768

E5-2650 V3 @ 2.30GHz

0.307 

default

30 (23)

8

24

E5530  @ 2.40GHz

2.304 

TOTAL

53 (46)

 

 

532

 

 

 5.633

ESPACIO TOTAL DE ALMACENAMIENTO

163 TB


Link a la página del Cluster Híbrido de Supercómputo - Xiuhcoatl - Cinvestav 

 

 

 

Aplicaciones

 

ABCtoolbox/2.0

geneid/1.4

phylip/3.696

treemix/1.12

abyss/1.9.0

hapQTL/0.99

picard/2.4.1 

trimAl/1.2rev59 

augustus/2.5.5

hisat2/2.0.4

plink/1.9

trinity/2.1.1

bcftools/1.2

hmmer/3.1b1

prank/150803 

Trinotate/2.0.2 

bedtools2/2.25.0

Honey/14.1.15

pyrad/3.0.6 

tRNAscan/1.3.1 

bowtie/1.1.0

HTSeq/0.6.1

qiime/1.9.1 

usearch/5.2.236 

bowtie2/2.2.3

infernal/1.1.1

R/3.2.5 

usearch/6.1.544 

bwa/0.7.12

Kalign/2.04 

RECON/1.07

usearch/7.0.1090

cd-hit/4.6

lastz/1.02 

RepeatMasker/4.0 

usearch/8.1.1861 

cegma/2.5

maker/2.31

rnammer/1.2 

vcftools/0.1.13 

circos/0.69-2

mapreads/2.4.1

samtools/1.3.1 

velvet/1.2.10 

discovar/52488

mb/3.2.3

SnpEff/4.0e

Vienna/2.2.5

EMBOSS/6.6.0

mcl/12-068

SPAdes/3.8.1 

vsearch/1.11.1 

exonerate/2.2.0

mpirun/3.2

STAR/2.5.2a 

wgs/8.2 

FastQC/0.11.2

muscle/3.8.31

strauto/1.0

wise/2.4.1

FrameD/230207

ncbi-blast/2.2.31

structure/2.3.4 

GATK/3.5.0

orthologid/1.0.8

tabix/0.2.6 

Gblocks/0.91b

orthomcl/2.0.9

TransDecoder/3.0.0







For more information, contact: Cei Abreu-Goodger

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